Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20047600

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20047600
Fusion NameHPV-ASH1L integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS100
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr1
Cytogenetic Bandq22
Human Strand+
Human Integration Location Typeintronic
Hg19 Start155429152
Hg19 End155429152
Hg38 Start155459361
Hg38 End155459361
Junction SequenceGTGGACATTAGAGGAATATTAAAAGCAGTTTTTTTGGGCAATAACCTCAAGTTGAAAATAATCCAAGAGTAAAATCGAAGAACTGTATTACACACAAAAGCAAAGCAAAAAGCACGCCAGTAATGTTGTGGATGCAGTATCAAGATTTGTCATATAGACATAAATCCAGTAGACACTGTAATAGTTTTTGGT
Target Gene
Target GeneASH1L
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionAF534061
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 East Asian type, complete genome
Virus Genome Length7905 bp
Virus Breakpoint13911
Virus Breakpoint2-
Virus Gene NameHpV16gp6_E5
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-
Predicted VIS Effect
Gene IdENSG00000116539.14
Gene NameASH1L
Regionintron
Impactintronic_insertion
TranscriptTranscript 1: ENST00000368346.7, Transcript 2: ENST00000676814.1, Transcript 3: ENST00000392403.8, Transcript 4: ENST00000677042.1, Transcript 5: ENST00000678699.1, Transcript 6: ENST00000677825.1, Transcript 7: ENST00000679333.1, Transcript 8: ENST00000679097.1, Transcript 9: ENST00000678117.1, Transcript 10: ENST00000677213.1, Transcript 11: ENST00000679133.1
SpliceAI Score
Delta ScoresAcceptor Gain: 0.010 | Acceptor Loss: 0.010 | Donor Gain: 0.000 | Donor Loss: 0.020
Delta Score Max0.020
Delta Position at Max436
Delta Score FlagLOW
GeneASH1L
Altered Protein (FASTA)
AlphaGenome Analysis
Windowchr1:155393825-155524897
RNA-seq Change (±2kb)Mean: 0.00010762313468148932 | Peak: 1.2464447021484375
ATAC Change (±2kb)Mean: 6.39245699858293e-05 | Peak: 1.0142822265625
InterpretationRNA-seq: minimal change 0.8% | Splice sites: no signal in region (REF≈0, ALT≈0) | ATAC: minimal change 0.4%
Visualization