Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20047850

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20047850
Fusion NameHPV-ENSG00000285473 integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS105
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr1
Cytogenetic Bandp31.2
Human Strand+
Human Integration Location Typeintronic
Hg19 Start69488345
Hg19 End69488345
Hg38 Start69022662
Hg38 End69022662
Junction SequenceAGCACTTGAGAAGTTCATAGTTCATGAGCACAGGCTCACCAAAAGACTGAAACCTAATCATAGGACCACAGTATGCATCCCTTTCCTTCACACCTTAACAAAATATTAGTTCCTAAAGTATCAGGATTACAATACAGGGTATTTAGAATACATTTACCTGACCCCAATAAGTTTGGTTTTCCTGACACCTCATTTTATAATCCAGATACACAGCGGCTGGTTTGGGCCTGTG
Target Gene
Target GeneENSG00000285473, ENSG00000303108
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionAF534061
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 East Asian type, complete genome
Virus Genome Length7905 bp
Virus Breakpoint15807
Virus Breakpoint2-
Virus Gene NameHpV16gp8_L1
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-