Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20048613

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20048613
Fusion NameHPV-LINC02664 integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS004
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr10
Cytogenetic Bandp11.22
Human Strand+
Human Integration Location Typeintronic
Hg19 Start31426586
Hg19 End31426586
Hg38 Start31137657
Hg38 End31137657
Junction SequenceCTCTAAAGTCTGTAGAATAATAGCACATTATGATTATAGAGTCAGTCTAACTTTATAACGCTAGAGTAGTACAGAGAACTCTCATGTTGTTTAGGTTTTCCAACTGGGGACAGATGGGGCACACAATTCCTAGTGTGCCCATTAACAGGTCTTCCAAAGTACGAATGTCTACGTGTGTGC
Target Gene
Target GeneLINC02664
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionAF534061
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 East Asian type, complete genome
Virus Genome Length7905 bp
Virus Breakpoint1848
Virus Breakpoint2-
Virus Gene NameHpV16gp2_E7
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-