Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20048825

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20048825
Fusion NameHPV-KIAA1217 integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS096
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr10
Cytogenetic Bandp12.2
Human Strand+
Human Integration Location Typeintronic
Hg19 Start24274400
Hg19 End24274400
Hg38 Start23985471
Hg38 End23985471
Junction SequenceGGTCAGGAGTTCATGACCAGCCACCTCAGCCTCCCAAGTAACTAGAACTACTGGTGCATGCCACCAAGTCCAGCTAATTTTTTTTTTTTTTTGAGACGGAATATTGCTCTGTCACCCAGATTGGCTGCCTAGTGAGGCCACTGTCTACTTGCCTCCTGTCCCAGTATCTAAGGTTGTAAGCACGGATGAATAT
Target Gene
Target GeneKIAA1217
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionAF534061
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 East Asian type, complete genome
Virus Genome Length7905 bp
Virus Breakpoint15645
Virus Breakpoint2-
Virus Gene NameHpV16gp7_L2;HpV16gp8_L1
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-