Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20049376

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20049376
Fusion NameHPV-TRAF6 integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS005
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr11
Cytogenetic Bandp12
Human Strand+
Human Integration Location Typeexonic
Hg19 Start36531721
Hg19 End36531721
Hg38 Start36510171
Hg38 End36510171
Junction SequenceCTATTGTATTTACTGATATTTTAGTTACCATGTGTTTTTTTCAGATGTCTCTTTGGCTGCCTAGTGAGGCCACTGTCTACTTGCCTCCTGTCCCAGTATCTAAGGTTGTAAGCACGGATGAATATGTTGCACGCACAAACATATATTATCATGCAGGAAAT
Target Gene
Target GeneTRAF6
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionAF534061
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 East Asian type, complete genome
Virus Genome Length7905 bp
Virus Breakpoint15627
Virus Breakpoint2-
Virus Gene NameHpV16gp7_L2;HpV16gp8_L1
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-