Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20049600

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20049600
Fusion NameHPV-ENSG00000255440 integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS098
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr11
Cytogenetic Bandq13.4
Human Strand-
Human Integration Location Typeexonic
Hg19 Start74109607
Hg19 End74109607
Hg38 Start74398562
Hg38 End74398562
Junction SequenceACCCAAGAGAGAGACTCCTTTGCCTGACACTACTAGCTAACATCAGTACCTGATAACTTGTTTGTGACAGATGGAAACACATGCGCCTAGAATGTGCTATTTATTACAAGGCCAGAGAAATGGGATTTAAACATATTAACCACCAGGTGGTGCCAACACTGGCTGTATCAAAGAATAAAGCATTACAAGCACATGAAAATATAAATCA
Target Gene
Target GeneENSG00000255440, ENSG00000254631
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionAF534061
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 East Asian type, complete genome
Virus Genome Length7905 bp
Virus Breakpoint12851
Virus Breakpoint2-
Virus Gene NameHpV16gp4_E2
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-