Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20050111

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20050111
Fusion NameHPV-ENSG00000305296 integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS004
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr12
Cytogenetic Bandp11.22
Human Strand+
Human Integration Location Typeintronic
Hg19 Start30571771
Hg19 End30571771
Hg38 Start30418838
Hg38 End30418838
Junction SequenceGCCAAAAAAGTTGTATTGGGACAGTTGTAACCAAAAAAACCAGGAAGACACCGGAAACCCCTGCCACACCACTAAGTTGCTGCACAGAGACTCAGTGGACAG
Target Gene
Target GeneENSG00000305296
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionAF534061
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 East Asian type, complete genome
Virus Genome Length7905 bp
Virus Breakpoint13489
Virus Breakpoint2-
Virus Gene NameHpV16gp4_E2;HpV16gp5_E4
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-