Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20050159

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20050159
Fusion NameHPV-NUP107 integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS030
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr12
Cytogenetic Bandq15
Human Strand+
Human Integration Location Typeintronic
Hg19 Start69101715
Hg19 End69101715
Hg38 Start68707935
Hg38 End68707935
Junction SequenceGATCAAGGTCCTGAAGCATTTCTTCGAAGAACTGTAACGTGAGATGAAACATGGCTCTACTGGTATGATCCTGAAGGCAAAGCCAATCAGAACAACAGCTACCACTGGAAGCGGTTGCAAATAGATGTACAAATATCCAGTGGAACTTCACTTTTGTTAGCCTGTAATGTAGTAAAGTCCAT
Target Gene
Target GeneNUP107
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionAF534061
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 East Asian type, complete genome
Virus Genome Length7905 bp
Virus Breakpoint16325
Virus Breakpoint2-
Virus Gene NameHpV16gp8_L1
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-