Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20050199

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20050199
Fusion NameHPV-C12orf75 integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS061
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr12
Cytogenetic Bandq23.3
Human Strand-
Human Integration Location Typeintronic
Hg19 Start105772773
Hg19 End105772773
Hg38 Start105378995
Hg38 End105378995
Junction SequenceCTTTTTTTTTTGGTTTTTGTTATTCTTGAATTTGTTTGGACTTGGCTTCTGTCACATGCATTCTTTTTTATTTTTATATATAATTTTTTTTTTGTTTGTTTGTTTGTTTTTTAATAAACTGTTATCACTTAACAATGCGACACAAACGTTCTGCAAAACGCACAAAACGTGCATCGGCTACCCAACTTTATAAAAC
Target Gene
Target GeneC12orf75
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionNC_001526
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16, complete genome
Virus Genome Length7906bp
Virus Breakpoint13297
Virus Breakpoint2-
Virus Gene NameHpV16gp7_L2;HpV16gp5_E1^E4;HpV16gp4_E2;HpV16gp6_E5//upstream;downstream
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-