Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20050775

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20050775
Fusion NameHPV-ADIPOR2 integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS102
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr12
Cytogenetic Bandp13.33
Human Strand+
Human Integration Location Typeintronic
Hg19 Start1892849
Hg19 End1892849
Hg38 Start1783683
Hg38 End1783683
Junction SequenceGAAGACATATACAGAATGAAACGGAAGAAAAAAGATATTCCACGCAAACAGAAACCAAAAGCAAACAGGAGTAGCTATACTTATATTAGAATTACAAACTATAACACCTTCTACATATACTACCACTTCACATGCAGCCTCACC
Target Gene
Target GeneADIPOR2
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionHQ644236
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 isolate AS411, complete genome
Virus Genome Length7905bp
Virus Breakpoint15254
Virus Breakpoint2-
Virus Gene NameHpV16gp7_L2
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-