Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20051545

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20051545
Fusion NameHPV-ENSG00000296068 integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS034
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr14
Cytogenetic Bandq11.2
Human Strand+
Human Integration Location Typeintronic
Hg19 Start21126512
Hg19 End21126512
Hg38 Start20658353
Hg38 End20658353
Junction SequenceACTTGAAGCAATGGAGAGATCATTCAGACAGAAAATCAATAAGGAAACATTGGACTTAAACTACACTCTGGACCAAATAAACTTAACAGATATATACAGATTTGACATACATTCAACAATGGCAGAATACCATTTTCCACTTCAGTATTGCCATACCCGCTGTCTTCGCTTTCAAATAATCTCCTTTTTGCAGCTCTACTTTGTTTTTCTATACATATAGCTTTTAATCTAGGAC
Target Gene
Target GeneENSG00000296068
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionAF536179
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 isolate European German 131 type, complete genome
Virus Genome Length7904bp
Virus Breakpoint11272
Virus Breakpoint2-
Virus Gene NameHpV16gp3_E1
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-