Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20052157

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20052157
Fusion NameHPV-LINC02351 integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS097
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr15
Cytogenetic Bandq26.3
Human Strand+
Human Integration Location Typeintronic
Hg19 Start98880155
Hg19 End98880155
Hg38 Start98336926
Hg38 End98336926
Junction SequenceCAAATTGTACACTCTAAATGGGTGAGTTATAGGGTATGTGAATTAGATCTCAATAAAGCTATTGTAAAAAACATGGAATCCCCATAAGGATCTGCAGACATTTGTAAATAATCAGGATATTTACAAATAGACAGATGAC
Target Gene
Target GeneLINC02351
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV18
Virus Genome AccessionGQ180789
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 18 isolate CU13, complete genome
Virus Genome Length7857 bp
Virus Breakpoint16355
Virus Breakpoint2-
Virus Gene NameHpV18gp8_L1
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-