Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20052224

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20052224
Fusion NameHPV-CTSH integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS018
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr15
Cytogenetic Bandq25.1
Human Strand+
Human Integration Location Typeintronic
Hg19 Start79230285
Hg19 End79230285
Hg38 Start78937943
Hg38 End78937943
Junction SequenceAGGCATGAGCCACAGTACCAAGCTCTATGGTGCTTCTTAAACTGTTGCCAGAGATGGGAGAATCTTACACCACACTATACCAAACTCTGATACAAATGAAAGATAGAAAAAATAGTAAGTTATGGTATACAACAATTATATGTAACAATTACATTATGTACATATACATTATGTAA
Target Gene
Target GeneCTSH
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionAF534061
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 East Asian type, complete genome
Virus Genome Length7905 bp
Virus Breakpoint14164
Virus Breakpoint2-
Virus Gene NameHpV16gp7_L2;HpV16gp4_E2;HpV16gp5_E4;HpV16gp6_E5//upstream;downstream
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-