Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20052456

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20052456
Fusion NameHPV-PML integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS110
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr15
Cytogenetic Bandq24.1
Human Strand+
Human Integration Location Typeintronic
Hg19 Start74301850
Hg19 End74301850
Hg38 Start74009509
Hg38 End74009509
Junction SequenceAAGAATTGTGTATTCAGTGTTGTTTCCAGCACAGAAATTCAAGCACAGGGTTGCTTCCCTCCTCTTCCTGTCTCTCTCCCTGTCTCTCCTGCTCTCTCTCGCTCTCTGATATAGCATCCCCTGTTTTTTTTTCCACTACAGCCTCTACATAAAACCATCCATTACATCCCGTACCCTC
Target Gene
Target GenePML
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionAF534061
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 East Asian type, complete genome
Virus Genome Length7905 bp
Virus Breakpoint1967
Virus Breakpoint2-
Virus Gene NameHpV16gp3_E1
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-