Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20052496

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20052496
Fusion NameHPV-CORO7-PAM16 integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS032
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr16
Cytogenetic Bandp13.3
Human Strand+
Human Integration Location Typeexonic
Hg19 Start4411674
Hg19 End4411674
Hg38 Start4361673
Hg38 End4361673
Junction SequenceTGCAATCTCCATAAATCTTTACTATTGTTATTAACCACCATCATTATCATATCAGAACCCCTCCACGACCCAGTCCATGGCACCATATCCAGTATCTACCATATCACCATCTTCCAAAACTGTGTTTTTAAGTTCTAAAGA
Target Gene
Target GeneCORO7-PAM16, CORO7
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV18
Virus Genome AccessionGQ180789
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 18 isolate CU13, complete genome
Virus Genome Length7857 bp
Virus Breakpoint16239
Virus Breakpoint2-
Virus Gene NameHpV18gp8_L1
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-