Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20054410

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20054410
Fusion NameHPV-LINC01117 integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS094
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr2
Cytogenetic Bandq31.1
Human Strand+
Human Integration Location Typeintronic
Hg19 Start177666739
Hg19 End177666739
Hg38 Start176802011
Hg38 End176802011
Junction SequenceTTGCATTTCCCTGATGACTAATGATTTTGAGCATCTTTTCATGTGCTTTGTGGCCATTTACATATTTTCTTTGGAGATATGTCTGTTCAGATCCTTTGCCTATCTTTTAAATGGTCTTACTAATTCTGAAAAACTTACCCCGTATAACTCTTTAAATTTTGCTAACATTGCTGCCTTTGCATTACTAGTTTT
Target Gene
Target GeneLINC01117, ENSG00000230552
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionAF534061
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 East Asian type, complete genome
Virus Genome Length7905 bp
Virus Breakpoint11546
Virus Breakpoint2-
Virus Gene NameHpV16gp3_E1
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-