Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20054472

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20054472
Fusion NameHPV-ENSG00000284337 integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS094
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr2
Cytogenetic Bandq13
Human Strand+
Human Integration Location Typeintronic
Hg19 Start110705718
Hg19 End110705718
Hg38 Start109948141
Hg38 End109948141
Junction SequenceAGTACTCCCATTTGGTCTTCCTTTAGCTAAACCTGAAGGAGAGACAATGTGGGATTGTCCAGATTCTCACATTTAATATAAATGGGATCATATAATACATGGCTTTGGTGCTATGGACTTTACTACATTACAGGCTAACAAAAGTGAAGTTCCACTGGATATTTGTACAT
Target Gene
Target GeneENSG00000284337, ENSG00000290731, ENSG00000283684, ENSG00000186148
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionAF534061
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 East Asian type, complete genome
Virus Genome Length7905 bp
Virus Breakpoint16244
Virus Breakpoint2-
Virus Gene NameHpV16gp8_L1
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-