Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20055543

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20055543
Fusion NameHPV-LINC01122 integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS110
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr2
Cytogenetic Bandp16.1
Human Strand+
Human Integration Location Typeintronic
Hg19 Start58938033
Hg19 End58938033
Hg38 Start58710898
Hg38 End58710898
Junction SequenceATTTACGTTTTATTATTTGGATATGTCTTATTTTCTCATGTTAAATATTAGGTTGTATGTGTGTTTGTATGTATGGTATAATAAACATGTGTGTATGTGTTTTTCACTGCTTGTGTAACTATTGTGTCATGCAACATAAATAAACTTATTGTTTCAACACCTACTAAT
Target Gene
Target GeneLINC01122
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionAF534061
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 East Asian type, complete genome
Virus Genome Length7905 bp
Virus Breakpoint17222
Virus Breakpoint2-
Virus Gene NameHpV16gp8_L1//downstream
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-