Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20055582

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20055582
Fusion NameHPV-ENSG00000294215 integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS110
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr2
Cytogenetic Bandq36.2
Human Strand+
Human Integration Location Typeintronic
Hg19 Start225220218
Hg19 End225220218
Hg38 Start224355501
Hg38 End224355501
Junction SequenceACAGGCCCCAGTGTGTGTTGTTCCCCTCTCTGTGACCGTGTGTTCTCATTGTTCAGCTCCCACTTTTAAGTAAGAACATGCTGTGTTTGGTTTTCTGTTCCCAGAAACCATAATCTACCATGGCTGATCCTGCAGGTAC
Target Gene
Target GeneENSG00000294215
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionAF534061
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 East Asian type, complete genome
Virus Genome Length7905 bp
Virus Breakpoint1838
Virus Breakpoint2-
Virus Gene NameHpV16gp2_E7
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-