Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20056040

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20056040
Fusion NameHPV-ENSG00000223563 integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS075
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr21
Cytogenetic Bandq21.3
Human Strand+
Human Integration Location Typeintronic
Hg19 Start28272161
Hg19 End28272161
Hg38 Start26899842
Hg38 End26899842
Junction SequenceGAGAAAATAAAGCACTTTTCTGAAGTTTCCCAGAATGCAATGTGACCAAAACCTTTATGGGAAAAGTTTTTAAAGTGATAATTTGGCTCTGAAATTCCCTTTTGTGTTCTTATGGAGAATGGATTTATATAATGGCAATGTACCACCTCATCTACCTCTACAACTGCTAAACGCAAAAAACGTAAGCTGTAAGTATTGTATGTATGTTG
Target Gene
Target GeneENSG00000223563, ENSG00000309000
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionAF534061
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 East Asian type, complete genome
Virus Genome Length7905 bp
Virus Breakpoint17104
Virus Breakpoint2-
Virus Gene NameHpV16gp8_L1
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-