Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20056096

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20056096
Fusion NameHPV-chr21:13995706 integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS099
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr21
Cytogenetic Bandq11.2
Human Strand+
Human Integration Location Typeintergenic
Hg19 Start15368027
Hg19 End15368027
Hg38 Start13995706
Hg38 End13995706
Junction SequenceGTTAACTTTGCACCTGAAAAGAGAACAGTTACCTCTTAAAATTAGAGAACTATTGTATCTAATTGTGTGCCCCATCTGTTCCCAGAAACCATAATCTACCATGGCTGATCCTGCAGGTACCAATGGGGAAGAGGGTAC
Target Gene
Target Gene-
Nearby GeneNF1P3
Distance5221
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionAF534061
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 East Asian type, complete genome
Virus Genome Length7905 bp
Virus Breakpoint1824
Virus Breakpoint2-
Virus Gene NameHpV16gp2_E7
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-