Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20056280

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20056280
Fusion NameHPV-PCAT14 integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS046
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr22
Cytogenetic Bandq11.23
Human Strand+
Human Integration Location Typeintronic
Hg19 Start23880683
Hg19 End23880683
Hg38 Start23538496
Hg38 End23538496
Junction SequenceTTGCTTCCTGGCAGTGCTCTGGATTTGATCTTTGCTCACAGGCTGTTACTTAATTTGGGATTCTCTCTCTCTGTCTCTCTTCTACTTGCCTCCTGTCCCAGTATCTAAGGTTGTAAGCACGGATGAATATGTTGCACGCACAAACATATACACTCACCTAACAGAGAAGAACCTTCCTTTTGACAGAGCATTTTTGAAACACTCTTTTTGTAGAATC
Target Gene
Target GenePCAT14
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionAF534061
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 East Asian type, complete genome
Virus Genome Length7905 bp
Virus Breakpoint15668
Virus Breakpoint2-
Virus Gene NameHpV16gp8_L1
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-