Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20057322

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20057322
Fusion NameHPV-LINC01213 integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS106
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr3
Cytogenetic Bandq25.1
Human Strand+
Human Integration Location Typeintronic
Hg19 Start149853171
Hg19 End149853171
Hg38 Start150135384
Hg38 End150135384
Junction SequenceAACATTGCTTTAGTTTTTCATAGTGGATATTTAGGTTGTCTAGTTTTTACTATTACAGTGCTACATCCTGTTTTTGTTTTATATATACTATATTTTGTAGCGCCAGCGGCCATTTTGTAGCTTCAACCGAATTCGGTTAGC
Target Gene
Target GeneLINC01213, ENSG00000241048
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionAF125673
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 isolate 16W12E, complete genome
Virus Genome Length7904 bp
Virus Breakpoint17383
Virus Breakpoint2-
Virus Gene NameHpV16gp8_L1//downstream
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-