Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20057839

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20057839
Fusion NameHPV-ENSG00000244345 integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS110
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr3
Cytogenetic Bandp13
Human Strand+
Human Integration Location Typeexonic
Hg19 Start72585097
Hg19 End72585097
Hg38 Start72535946
Hg38 End72535946
Junction SequenceCCACAATCAAGGTAATGAACATAGCCATTCCCCCCAAAAGTTTCCTTGTGTGTCTTTTAATCCTTCCGATATGGTTTTATGTAGAGGCTGTAGTGGAAAAAAAAACAGGGGATGCTATATCAGATGACGAGAACGAAA
Target Gene
Target GeneENSG00000244345
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionAF534061
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 East Asian type, complete genome
Virus Genome Length7905 bp
Virus Breakpoint1914
Virus Breakpoint2-
Virus Gene NameHpV16gp3_E1
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-