Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20059097

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20059097
Fusion NameHPV-LINC02161 integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS004
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr5
Cytogenetic Bandq14.3
Human Strand+
Human Integration Location Typeintronic
Hg19 Start88921325
Hg19 End88921325
Hg38 Start89625508
Hg38 End89625508
Junction SequenceAGCTTCAAAGAAACCTCTTCTTGGATTTTATTAGCCCAAGAGACCAGGATTAAAGGCCAAACCAAAATTTACATTAGGAAAACGAAAAGCTACACCCACCACCTCATCTACCTCTACAACTGCTAAACGCAAAAAACGTAAGCTGTAAGTATTGTATGTATGTTGACTCAGTGTTGTTTGTACACT
Target Gene
Target GeneLINC02161
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionAF534061
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 East Asian type, complete genome
Virus Genome Length7905 bp
Virus Breakpoint17051
Virus Breakpoint2-
Virus Gene NameHpV16gp8_L1
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-