Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20060340

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20060340
Fusion NameHPV-ATG5 integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS029
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr6
Cytogenetic Bandq21
Human Strand+
Human Integration Location Typeintronic
Hg19 Start106763158
Hg19 End106763158
Hg38 Start106315283
Hg38 End106315283
Junction SequenceGGAATGGTACACAGAGAGGCCAAGTAAAGTCTAAACAGATGGGCTGTGTGGGGTTTAGATAATGCACTTTTTGTCCAATCACATTTCTACACAGTTGTCAATCATGCCTACATAATGAAGCCTCCATATCAACCTTATGCACCAAAAGAGAACTGCAATGTTTCAGGACCCACAGGAGCGACCCAGAAATTTACCACAGTTATGCACAGAGCTGCAAAC
Target Gene
Target GeneATG5
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionAF534061
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 East Asian type, complete genome
Virus Genome Length7905 bp
Virus Breakpoint180
Virus Breakpoint2-
Virus Gene NameHpV16gp1_E6;HpV16gp2_E7;HpV16gp3_E1//upstream
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-