Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20060358

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20060358
Fusion NameHPV-AGPAT4 integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS033
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr6
Cytogenetic Bandq26
Human Strand+
Human Integration Location Typeintronic
Hg19 Start161661840
Hg19 End161661840
Hg38 Start161240808
Hg38 End161240808
Junction SequenceGTAATCACAGCACTTTGGGAGGCCGATGTGGGAGGATCACCTGAGGTCAGGAGTTTAAGACCAGCCTGGCCAATATGTAAATGTTTAAAGTTGTATTCTAAAATTAGTGAGTATAGACATTATTGTTATAGTTTGTATGGAACAACATTAGAACAGCAATACAACAAACCGTTGTGTGATTTGTTAATTAGGTGTATTAACTGTCAAAAGCCAC
Target Gene
Target GeneAGPAT4
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionAF534061
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 East Asian type, complete genome
Virus Genome Length7905 bp
Virus Breakpoint1294
Virus Breakpoint2-
Virus Gene NameHpV16gp1_E6
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-