Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20061081

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20061081
Fusion NameHPV-ENSG00000285446 integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS109
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr6
Cytogenetic Bandq22.1
Human Strand+
Human Integration Location Typeintronic
Hg19 Start116747335
Hg19 End116747335
Hg38 Start116426172
Hg38 End116426172
Junction SequenceGGGTTTCACGATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCGCCTGCCTTGGCCCCTCAAAGTATGGGAAGTTCATGCGGGTGGTCAGGTAATATTATGTCCTACATCTGTGTTTAGCAGCAACGAAGT
Target Gene
Target GeneENSG00000285446, DSE
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionAF534061
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 East Asian type, complete genome
Virus Genome Length7905 bp
Virus Breakpoint13298
Virus Breakpoint2-
Virus Gene NameHpV16gp4_E2
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-