Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20062530

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20062530
Fusion NameHPV-LINC01289 integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS094
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr8
Cytogenetic Bandq12.3
Human Strand+
Human Integration Location Typeintronic
Hg19 Start64710306
Hg19 End64710306
Hg38 Start63797749
Hg38 End63797749
Junction SequenceGGTCACCCCATCCTCTCTGAAACTCTCAATGGCTTCCTATGACACAAATAAGATTCAAATTCTTTAGAGTTTGATGCCCTCTATTTTTAAAACACCCATCCCTGAATAACTGTGTTTATTAACTCTAATGGTGGACAATCACCTGGAGTTACTGCAACATTGGTACAT
Target Gene
Target GeneLINC01289, LINC01414
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionAF534061
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 East Asian type, complete genome
Virus Genome Length7905 bp
Virus Breakpoint16220
Virus Breakpoint2-
Virus Gene NameHpV16gp8_L1
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-