Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20064398

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20064398
Fusion NameHPV-CENPI integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS104
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human ChromosomechrX
Cytogenetic Bandq22.1
Human Strand-
Human Integration Location Typeintronic
Hg19 Start100405935
Hg19 End100405935
Hg38 Start101150946
Hg38 End101150946
Junction SequenceAGCTACCCTGTCTTGTTGCAGTGATGAACTCTGGAGAGAGACTGGGAGTGGGAGTGTAAGATGGGAAAGGGAGATGAGGGGGTGATTGGAAGCAAATTGTTATGTTTTTAAGGTATCAAGGTGTAGAGTTTATGTCATTTTTAACTGCATTAAAAAGATTTTTGCAAGGCATACCTAAAAAAAATTGCATATTACTATATGGTGCAGC
Target Gene
Target GeneCENPI
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionAF534061
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 East Asian type, complete genome
Virus Genome Length7905 bp
Virus Breakpoint12172
Virus Breakpoint2-
Virus Gene NameHpV16gp3_E1
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-