Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20064551

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20064551
Fusion NameHPV-LINC01278 integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS109
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human ChromosomechrX
Cytogenetic Bandq11.1
Human Strand+
Human Integration Location Typeintronic
Hg19 Start62546513
Hg19 End62546513
Hg38 Start63326634
Hg38 End63326634
Junction SequenceGAAACCTCTTTGTGATCTGTGCTTTCAATTCACAGAGTTGAACCATTCTATTGATAGAGGAGATTTGAAACACTTTTTTTGTACAGATGTCTTTGCTTTTCTTCAGGACACAGTGGCTTTTGACAGTTAATACACCTAATTAACAAATCACAC
Target Gene
Target GeneLINC01278
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionAF534061
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 East Asian type, complete genome
Virus Genome Length7905 bp
Virus Breakpoint1467
Virus Breakpoint2-
Virus Gene NameHpV16gp1_E6
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-