Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20064790

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20064790
Fusion NameHPV-ENSG00000258702 integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS038
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr14
Cytogenetic Bandq32.2
Human Strand+
Human Integration Location Typeintronic
Hg19 Start97094049
Hg19 End97094049
Hg38 Start96627712
Hg38 End96627712
Junction SequenceGTTTGGTGGATACATATCGTTTTGTACAATCTGTTGCTATTACCTGTCAAAAGGATGCTGCACCGGCTGGTTAAGGTGGCCCAGGCATGGGGCCTAGTGGAACTGAGCTGGGTTTGTCTGACTAATTGAAGCAAGGTTGCTC
Target Gene
Target GeneENSG00000258702
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV18
Virus Genome AccessionGQ180784
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 18 isolate CU8, complete genome
Virus Genome Length7857 bp
Virus Breakpoint16920
Virus Breakpoint2-
Virus Gene NameHpV18gp8_L1
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-