Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20064997

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20064997
Fusion NameHPV-SLC41A2 integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS097
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr12
Cytogenetic Bandq23.3
Human Strand+
Human Integration Location Typeintronic
Hg19 Start105220392
Hg19 End105220392
Hg38 Start104826614
Hg38 End104826614
Junction SequenceCTAAGTCTAAAGAAAACTTTTCCTTTAAATCCACATTCCAAAACTTTAACTTATCATAGGGATCCTTATTTACAAAAATAAGATGCTGGCCCAAGAGCCATGGATTACTGATCCTGCTTTGTCATCAGATGTCTCAAA
Target Gene
Target GeneSLC41A2
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV18
Virus Genome AccessionGQ180789
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 18 isolate CU13, complete genome
Virus Genome Length7857 bp
Virus Breakpoint16922
Virus Breakpoint2-
Virus Gene NameHpV18gp8_L1
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-