Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20065020

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20065020
Fusion NameHPV-ENSG00000294866 integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS097
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr3
Cytogenetic Bandq12.1
Human Strand+
Human Integration Location Typeintronic
Hg19 Start99097428
Hg19 End99097428
Hg38 Start99378584
Hg38 End99378584
Junction SequenceACAGGAGACTGTGTAGAAGCACATATTGTTAAATTGGTACTGCGAGTGGTATCTACCACAGTAACAAATAATTGATTAGTCTCTGCTACTAAACCTCTCAGAGCTAGTTGAGGATTAAATAAGCCATTAAATTAAAAA
Target Gene
Target GeneENSG00000294866, ENSG00000243296
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV18
Virus Genome AccessionGQ180789
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 18 isolate CU13, complete genome
Virus Genome Length7857 bp
Virus Breakpoint16589
Virus Breakpoint2-
Virus Gene NameHpV18gp8_L1
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-