Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20066530

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20066530
Fusion NameHPV-chr22:43192097 integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS102
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr22
Cytogenetic Bandq13.2
Human Strand+
Human Integration Location Typeintergenic
Hg19 Start43588103
Hg19 End43588103
Hg38 Start43192097
Hg38 End43192097
Junction SequenceATACCAATAGTATTAATGATGTGTATGTAGACACAGACAAAAGCAGCGGACGTATTAATAGGCAGACACACAAAAAGTTTTAAAGATACTGACATTGGGGGCCCCCAAGAAAACTTCAAGCCAGAGTACCATACATTTCA
Target Gene
Target Gene-
Nearby GeneTTLL12
Distance4963
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionHQ644236
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 isolate AS411, complete genome
Virus Genome Length7905bp
Virus Breakpoint13913
Virus Breakpoint2-
Virus Gene NameHpV16gp6_E5
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-