Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20067205

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20067205
Fusion NameHPV-chr17:35802527 integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS102
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr17
Cytogenetic Bandq12
Human Strand-
Human Integration Location Typeintergenic
Hg19 Start34129531
Hg19 End34129531
Hg38 Start35802527
Hg38 End35802527
Junction SequenceAAAAACAAAGTAGAGCTGCAAAAAGGAGATTATTTGAAAGCGAAGACAGCGGGTATGGCAATACTGAAGTGGAAACTCAGCAGATGTTCCAGGTATAACATGGGACATGGCCCTTTAAGAGTGTGGAAGAGGTTCCTACCCTGTGGTATGTGTGTGTATATCAAATG
Target Gene
Target Gene-
Nearby GeneENSG00000270829
Distance5962
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionHQ644236
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 isolate AS411, complete genome
Virus Genome Length7905bp
Virus Breakpoint11304
Virus Breakpoint2-
Virus Gene NameHpV16gp3_E1
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-