Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20067532

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20067532
Fusion NameHPV-TTN-AS1 integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS057
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr2
Cytogenetic Bandq31.2
Human Strand-
Human Integration Location Typeexonic
Hg19 Start179539981
Hg19 End179539981
Hg38 Start178675254
Hg38 End178675254
Junction SequenceATGCAGGATTAAAGGCCAAACCAAAATTTACATTAGGAAAACGAAAAGCTACACCCACCACCTCATCTACCTCTACAACTGCTAAACGCAAAAAACGTAAGCTGTAAGTATTGTATGTATGTTGAATTAGTGTTGTTTGTTGATAGCATTATATGTAATAAAGAGTGTTGGGTTTGGGGAGAAGATAAGCAAATTAAATAAAACAAAAACCCCCTTGTGCCC
Target Gene
Target GeneTTN-AS1, TTN
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionNC_001526
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16, complete genome
Virus Genome Length7906bp
Virus Breakpoint16326
Virus Breakpoint2-
Virus Gene NameHpV16gp1_E6;HpV16gp8_E6;HpV16gp8_L1//upstream;downstream
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-
Predicted VIS Effect
TranscriptTranscript 1: ENST00000768381.1, Transcript 2: ENST00000702938.2, Transcript 3: ENST00000659121.1, Transcript 4: ENST00000590773.6, Transcript 5: ENST00000592630.5, Transcript 6: ENST00000592600.6, Transcript 7: ENST00000653807.1, Transcript 8: ENST00000585451.5, Transcript 9: ENST00000657023.1, Transcript 10: ENST00000626117.2, Transcript 11: ENST00000625480.2, Transcript 12: ENST00000625536.2, Transcript 13: ENST00000589830.1, Transcript 14: ENST00000671355.1, Transcript 15: ENST00000589487.5, Transcript 16: ENST00000431752.1, Transcript 17: ENST00000342175.12, Transcript 18: ENST00000359218.11, Transcript 19: ENST00000342992.11, Transcript 20: ENST00000425332.3, Transcript 21: ENST00000426232.6, Transcript 22: ENST00000436599.2, Transcript 23: ENST00000446966.2, Transcript 24: ENST00000460472.6, Transcript 25: ENST00000589042.5, Transcript 26: ENST00000591111.5, Transcript 27: ENST00000715174.1, Transcript 28: ENST00000412264.2
Transcript 1 Gene IdENSG00000237298.12
Transcript 1 Gene NameTTN-AS1
Transcript 1 Regionintron
Transcript 1 Impactintronic_insertion
Transcript 2 Gene IdENSG00000237298.12
Transcript 2 Gene NameTTN-AS1
Transcript 2 Regionintron
Transcript 2 Impactintronic_insertion
Transcript 3 Gene IdENSG00000237298.12
Transcript 3 Gene NameTTN-AS1
Transcript 3 Regionintron
Transcript 3 Impactintronic_insertion
Transcript 4 Gene IdENSG00000237298.12
Transcript 4 Gene NameTTN-AS1
Transcript 4 Regionintron
Transcript 4 Impactintronic_insertion
Transcript 5 Gene IdENSG00000237298.12
Transcript 5 Gene NameTTN-AS1
Transcript 5 Regionintron
Transcript 5 Impactintronic_insertion
Transcript 6 Gene IdENSG00000237298.12
Transcript 6 Gene NameTTN-AS1
Transcript 6 Regionintron
Transcript 6 Impactintronic_insertion
Transcript 7 Gene IdENSG00000237298.12
Transcript 7 Gene NameTTN-AS1
Transcript 7 Regionintron
Transcript 7 Impactintronic_insertion
Transcript 8 Gene IdENSG00000237298.12
Transcript 8 Gene NameTTN-AS1
Transcript 8 Regionintron
Transcript 8 Impactintronic_insertion
Transcript 9 Gene IdENSG00000237298.12
Transcript 9 Gene NameTTN-AS1
Transcript 9 Regionintron
Transcript 9 Impactintronic_insertion
Transcript 10 Gene IdENSG00000237298.12
Transcript 10 Gene NameTTN-AS1
Transcript 10 Regionintron
Transcript 10 Impactintronic_insertion
Transcript 11 Gene IdENSG00000237298.12
Transcript 11 Gene NameTTN-AS1
Transcript 11 Regionintron
Transcript 11 Impactintronic_insertion
Transcript 12 Gene IdENSG00000237298.12
Transcript 12 Gene NameTTN-AS1
Transcript 12 Regionintron
Transcript 12 Impactintronic_insertion
Transcript 13 Gene IdENSG00000237298.12
Transcript 13 Gene NameTTN-AS1
Transcript 13 Regionintron
Transcript 13 Impactintronic_insertion
Transcript 14 Gene IdENSG00000237298.12
Transcript 14 Gene NameTTN-AS1
Transcript 14 Regionintron
Transcript 14 Impactintronic_insertion
Transcript 15 Gene IdENSG00000237298.12
Transcript 15 Gene NameTTN-AS1
Transcript 15 Regionexon_non_coding
Transcript 15 Impactnoncoding_exon_insertion
Transcript 16 Gene IdENSG00000237298.12
Transcript 16 Gene NameTTN-AS1
Transcript 16 Regionintron
Transcript 16 Impactintronic_insertion
Transcript 17 Gene IdENSG00000155657.29
Transcript 17 Gene NameTTN
Transcript 17 Regionintron
Transcript 17 Impactintronic_insertion
Transcript 18 Gene IdENSG00000155657.29
Transcript 18 Gene NameTTN
Transcript 18 Regionintron
Transcript 18 Impactintronic_insertion
Transcript 19 Gene IdENSG00000155657.29
Transcript 19 Gene NameTTN
Transcript 19 Regionintron
Transcript 19 Impactintronic_insertion
Transcript 20 Gene IdENSG00000155657.29
Transcript 20 Gene NameTTN
Transcript 20 Regionintron
Transcript 20 Impactintronic_insertion
Transcript 21 Gene IdENSG00000155657.29
Transcript 21 Gene NameTTN
Transcript 21 Regionintron
Transcript 21 Impactintronic_insertion
Transcript 22 Gene IdENSG00000155657.29
Transcript 22 Gene NameTTN
Transcript 22 Regionintron
Transcript 22 Impactintronic_insertion
Transcript 23 Gene IdENSG00000155657.29
Transcript 23 Gene NameTTN
Transcript 23 Regionintron
Transcript 23 Impactintronic_insertion
Transcript 24 Gene IdENSG00000155657.29
Transcript 24 Gene NameTTN
Transcript 24 Regionintron
Transcript 24 Impactintronic_insertion
Transcript 25 Gene IdENSG00000155657.29
Transcript 25 Gene NameTTN
Transcript 25 Regionintron
Transcript 25 Impactintronic_insertion
Transcript 26 Gene IdENSG00000155657.29
Transcript 26 Gene NameTTN
Transcript 26 Regionintron
Transcript 26 Impactintronic_insertion
Transcript 27 Gene IdENSG00000155657.29
Transcript 27 Gene NameTTN
Transcript 27 Regionintron
Transcript 27 Impactintronic_insertion
Transcript 28 Gene IdENSG00000155657.29
Transcript 28 Gene NameTTN
Transcript 28 Regionintron
Transcript 28 Impactintronic_insertion
SpliceAI Score
Delta ScoresAcceptor Gain: 0.040 | Acceptor Loss: 0.020 | Donor Gain: 0.010 | Donor Loss: 0.040
Delta Score Max0.040
Delta Position at Max-114
Delta Score FlagLOW
GeneTTN
Altered Protein (FASTA)
AlphaGenome Analysis
Chromosomechr2