Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20067795

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20067795
Fusion NameHPV-MYOSLID-AS1 integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS061
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr2
Cytogenetic Bandq33.3
Human Strand+
Human Integration Location Typeexonic
Hg19 Start208235548
Hg19 End208235548
Hg38 Start207370824
Hg38 End207370824
Junction SequenceGTGGGCATTAGTGGCCACACCTAATGGCTGACCACGACCTACCTCAACACCTACACAGGCCCAAACCAGCCGCCTAACTGGTCCTCCTTCCTCAACTGCACCCAACAGTCTCCTCCCCACCCCAAACCATCCAATCTTTTT
Target Gene
Target GeneMYOSLID-AS1, ENSG00000298903
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionNC_001526
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16, complete genome
Virus Genome Length7906bp
Virus Breakpoint15061
Virus Breakpoint2-
Virus Gene NameHpV16gp8_L1
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-