| Basic Information ▶ | |
| VISDB ID | TVIS20067882 |
|---|---|
| Fusion Name | HPV-chr13:90234159 integration |
| Validated | No |
| Curated Way | Curated |
| Method | RNA sequencing |
| Wet Assay | No |
| Sample ID | A3GN |
| Sample Name | TCGA |
| Sample Type | Cell Line (CaSki, SiHa, HeLa) |
| Age | - |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | Cervical Cancer |
| Disease Abbreviation | CC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 38624210 |
| Journal | mBio |
| Published Year | 2024 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh38/hg38 |
| Human Genome RefSeq Accession | GCF_000001405.40 |
| Human Chromosome | chr13 |
| Cytogenetic Band | q31.3 |
| Human Strand | + |
| Human Integration Location Type | intergenic |
| Hg19 Start | - |
| Hg19 End | - |
| Hg38 Start | 90234159 |
| Hg38 End | 90234159 |
| Junction Sequence | - |
| Target Gene ▶ | |
| Target Gene | - |
| Nearby Gene | KRT18P27 |
| Distance | 2477 |
| Virus Information ▶ | |
| Virus Name | Human Papillomavirus |
| Virus Subtype Name | HPV16 |
| Virus Genome Accession | HPV16 REF.1 |
| TaxonomyID | 10566 |
| Virus Abbreviation | HPV |
| Virus Genome | Human Papillomavirus 16 (HPV16), complete genome |
| Virus Genome Length | 7904 bp |
| Virus Breakpoint1 | 7810 |
| Virus Breakpoint2 | - |
| Virus Gene Name | E1 |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D