Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20068156

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20068156
Fusion NameHPV-chrX:129438134 integration
ValidatedNo
Curated WayCurated
MethodRNA sequencing
Wet AssayNo
Sample IDT5350
Sample NameCell line
Sample TypeCell Line (CaSki, SiHa, HeLa)
Age-
Gender-
Disease Information
Disease NameCervical Cancer
Disease AbbreviationCC
CancerYes
Literature
PubMed ID38624210
JournalmBio
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh38/hg38
Human Genome RefSeq AccessionGCF_000001405.40
Human ChromosomechrX
Cytogenetic Bandq25
Human Strand+
Human Integration Location Typeintergenic
Hg19 Start-
Hg19 End-
Hg38 Start129438134
Hg38 End129438134
Junction Sequence-
Target Gene
Target Gene-
Nearby GeneRNA5SP513
Distance1487
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionHPV16 REF.1
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman Papillomavirus 16 (HPV16), complete genome
Virus Genome Length7904 bp
Virus Breakpoint1607
Virus Breakpoint2-
Virus Gene NameL2
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-