Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20068442

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20068442
Fusion NameHPV-chr8:46034824 integration
ValidatedNo
Curated WayCurated
MethodNanopore Long-Read Sequencing
Wet AssayYes
Sample ID-
Sample NameCaSki
Sample TypeCell line
Age-
Gender-
Disease Information
Disease NameCervical Cancer
Disease AbbreviationCC
CancerYes
Literature
PubMed ID38932482
JournalJournal of Medical Virology
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh38/hg38
Human Genome RefSeq AccessionGCF_000001405.40
Human Chromosomechr8
Cytogenetic Bandq11.1
Human Strand+
Human Integration Location Typeintergenic
Hg19 Start-
Hg19 End-
Hg38 Start46034824
Hg38 End46038604
Junction Sequence-
Target Gene
Target Gene-
Nearby GeneENSG00000276685
Distance5933
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome Accessiongi|333031|lcl|HPV16REF.1|
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman Papillomavirus 16 (HPV16), complete genome
Virus Genome Length7904 bp
Virus Breakpoint16723
Virus Breakpoint26898
Virus Gene NameL1
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-