| Basic Information ▶ | |
| VISDB ID | TVIS20068613 |
|---|---|
| Fusion Name | HPV-ENSG00000278153 integration |
| Validated | No |
| Curated Way | Curated |
| Method | Nanopore Long-Read Sequencing |
| Wet Assay | Yes |
| Sample ID | - |
| Sample Name | CaSki |
| Sample Type | Cell line |
| Age | - |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | Cervical Cancer |
| Disease Abbreviation | CC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 38932482 |
| Journal | Journal of Medical Virology |
| Published Year | 2024 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh38/hg38 |
| Human Genome RefSeq Accession | GCF_000001405.40 |
| Human Chromosome | chr20 |
| Cytogenetic Band | p12.1 |
| Human Strand | + |
| Human Integration Location Type | exonic |
| Hg19 Start | - |
| Hg19 End | - |
| Hg38 Start | 13256123 |
| Hg38 End | 14903254 |
| Junction Sequence | - |
| Target Gene ▶ | |
| Target Gene | ENSG00000278153, GAPDHP2, RNU6-278P, RPS3P1, AIMP1P1, RN7SL864P, ENSG00000287062, RNF11P2, RPS10P2, ENSG00000289572, NDUFAF5, FLRT3, RNU6-228P, MACROD2-IT1, MACROD2-AS1, ISM1, ESF1, SEL1L2, TASP1, MACROD2 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Human Papillomavirus |
| Virus Subtype Name | HPV16 |
| Virus Genome Accession | gi|333031|lcl|HPV16REF.1| |
| TaxonomyID | 10566 |
| Virus Abbreviation | HPV |
| Virus Genome | Human Papillomavirus 16 (HPV16), complete genome |
| Virus Genome Length | 7904 bp |
| Virus Breakpoint1 | 3552 |
| Virus Breakpoint2 | 5671 |
| Virus Gene Name | E1 |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D