Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20068669

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20068669
Fusion NameHPV-ENSG00000142539 integration
ValidatedNo
Curated WayCurated
MethodNanopore Long-Read Sequencing
Wet AssayYes
Sample ID-
Sample NameCaSki
Sample TypeCell line
Age-
Gender-
Disease Information
Disease NameCervical Cancer
Disease AbbreviationCC
CancerYes
Literature
PubMed ID38932482
JournalJournal of Medical Virology
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh38/hg38
Human Genome RefSeq AccessionGCF_000001405.40
Human Chromosomechr19
Cytogenetic Bandq13.33,q13.41,q13.42
Human Strand+
Human Integration Location Typeexonic
Hg19 Start-
Hg19 End-
Hg38 Start50395293
Hg38 End54582929
Junction Sequence-
Target Gene
Target GeneENSG00000142539, GARIN5A, ENSG00000268854, JOSD2, ENSG00000299174, ENSG00000268231, C19orf81, GPR32P1, GPR32, ACP4, ENSG00000268375, C19orf48P, C19orf48P, SNORD88B, SNORD88A, SNORD88C, ENSG00000305714, ENSG00000284711, TMEM277P, KLK15, KLKP1, KLK4, PPIAP59, KLK5, KLK6, ENSG00000279676, KLK7, KLK8, ENSG00000268739, KLK11, KLK12, ENSG00000268390, KLK13, ENSG00000309146, KLK14, ENSG00000306722, SIGLEC18P, ENSG00000267990, ENSG00000306696, ENSG00000267895, ENSG00000269681, SIGLEC17P, SIGLEC17P, SIGLEC20P, ENSG00000268652, MIR8074, SIGLEC22P, LINC01872, ENSG00000299241, ENSG00000299129, VSIG10L, VSIG10L-AS1, ENSG00000297420, CLDND2, NKG7, C19orf84, NIFKP6, SIGLEC10-AS2, SIGLEC10-AS1, ENSG00000268711, ENSG00000269181, SIGLEC8, ENSG00000301984, ENSG00000268957, CEACAM18, ENSG00000268839, ENSG00000295943, SIGLEC27P, ENSG00000268777, SIGLEC29P, ENSG00000289967, ENSG00000293175, ENSG00000269388, ENSG00000267808, RPL9P33, ENSG00000306276, RPL7P51, ENSG00000295145, MIR99B, MIRLET7E, MIR125A, ENSG00000298915, HAS1, ENSG00000304078, ENSG00000295953, ENSG00000306035, ENSG00000286236, ENSG00000298727, ENSG00000268316, ENSG00000269483, ENSG00000283236, ENSG00000283285, ENSG00000298273, ENSG00000275055, ENSG00000260160, ENSG00000300777, ENSG00000270248, ENSG00000268458, RPL37P23, ENSG00000267927, MIR6801, ENSG00000268015, ENSG00000277562, Y_RNA, MIR643, ENSG00000277977, DPPA5P1, ENSG00000288253, ENSG00000278543, ENSG00000269349, ENSG00000289102, RPL39P34, ENSG00000268970, ENSG00000288953, ENSG00000296501, PABPN1P2, ENSG00000308994, ENSG00000283695, ZNF888-AS1, ZNF321P, ENSG00000306382, ARPC1AP2, ENSG00000267943, ERVV-1, ENSG00000306396, ENSG00000268842, ZNF818P, NDUFV2P1, ENSG00000269288, VN1R2, VN1R4, ENSG00000269758, BIRC8, BIRC8, ENSG00000290987, FAM90A28P, VN1R6P, ENSG00000241069, RPL39P36, ENSG00000249435, TPM3P9, ENSG00000299906, TPM3P6, ENSG00000241434, ENSG00000213777, ENSG00000274892, OSTCP3, RN7SL317P, RNU6-698P, MIR512-1, MIR512-2, MIR1323, MIR498, MIR520E, MIR515-1, MIR519E, MIR520F, MIR515-2, MIR519C, MIR1283-1, MIR520A, MIR526B, MIR519B, MIR525, MIR523, MIR518F, MIR520B, MIR518B, MIR526A1, MIR520C, MIR518C, MIR524, MIR517A, MIR519D, MIR521-2, RNU6-803P, MIR520D, MIR517B, MIR520G, MIR516B2, MIR526A2, MIR518E, MIR518A1, RNU6-980P, MIR518D, MIR516B1, MIR518A2, MIR517C, MIR520H, RNU6-982P, MIR521-1, RNU6-751P, MIR522, MIR519A1, MIR527, MIR516A1, MIR1283-2, RNU6-1041P, MIR516A2, MIR519A2, RNU6-165P, HMGN1P32, SEPTIN7P8, ENSG00000293846, ENSG00000238150, ENSG00000269877, MIR371A, MIR371B, MIR372, MIR373, ENSG00000305907, ENSG00000299481, ENSG00000307001, ENSG00000304583, MIR935, ENSG00000297499, ENSG00000276206, TARM1, NDUFA3, TFPT, PRPF31-AS1, LENG1, TSEN34, ENSG00000223660, ENSG00000300077, ENSG00000300100, ENSG00000224579, LILRB3, ENSG00000269524, ENSG00000235081, LILRA6, ENSG00000249189, LILRB5, RNU6-1307P, ENSG00000240296, ENSG00000300050, MIR4752, ENSG00000240197, ENSG00000276758, ENSG00000251431, ENSG00000234436, VN1R104P, LILRA4, ENSG00000309882, ENSG00000288742, ENSG00000237955, ENSG00000227407, ENSG00000268496, ENSG00000267838, ENSG00000235681, LENG9, CDC42EP5, ENSG00000213016, ENSG00000235181, ENSG00000303131, ENSG00000303115, POLD1, SPIB, EMC10, MYREM, ASPDH, LRRC4B, ENSG00000298650, SYT3, SHANK1, ENSG00000305066, SMIM47, TMEM277P, KLK1, ENSG00000267968, KLK2, KLKP1, ENSG00000269495, ENSG00000269741, KLK9, KLK10, ENSG00000268906, CTU1, ENSG00000306607, SIGLEC9, SIGLEC7, SIGLEC21P, ENSG00000290859, CD33, SIGLEC24P, IGLON5, ENSG00000267984, ETFB, ENSG00000269403, ENSG00000268520, LIM2-AS1, SIGLEC10, SIGLEC12, SIGLEC6, ENSG00000269130, ZNF175, LINC01530, SIGLEC5, SPACA6-AS1, SPACA6, FPR2, FPR3, ZNF577, ZNF649-AS1, ZNF613, ZNF350-AS1, ZNF350, ZNF615, ENSG00000297250, ZNF614, ZNF841, ZNF616, PPP2R1A, ENSG00000302940, ENSG00000302922, ZNF766, ENSG00000269535, ZNF610, ZNF880, ZNF528-AS1, ZNF528, ZNF534, ZNF578, ENSG00000268886, ENSG00000290721, ZNF137P, ENSG00000269825, ENSG00000290073, ZNF83, ZNF611, ZNF600, ENSG00000303330, ZNF468, ZNF320, ENSG00000306366, ZNF888, ZNF321P, ENSG00000269082, ENSG00000306352, ZNF702P, ZNF702P, ERVV-2, ENSG00000306331, ZNF415, ZNF347, ENSG00000299075, ZNF665, ZNF677, FAM90A27P, ZNF525, ZNF765, ENSG00000299888, TPM3P9, ZNF761, ENSG00000287608, ENSG00000293186, ZNF331, ENSG00000290755, ENSG00000270347, ENSG00000269564, NLRP12, MYADM-AS1, PRKCG, CACNG7, CACNG8, VSTM1, OSCAR, PRPF31, CNOT3, TMC4, MBOAT7, RPS9, ENSG00000300027, LILRB2, ENSG00000295857, LILRA5, ENSG00000275210, ENSG00000250507, LAIR1, ENSG00000309847, ENSG00000309284, TTYH1, LENG8-AS1, LENG8, LAIR2, ENSG00000290933, KIR3DX1, LILRA2, MYBPC2, CLEC11A, KLK3, ENSG00000267879, ENSG00000268595, SIGLECL1, SIGLEC5, SIGLEC14, FPR1, ZNF649, ZNF432, ENSG00000267827, ZNF836, ENSG00000269102, ZNF480, ZNF808, ZNF701, ZNF28, ZNF816-ZNF321P, ZNF816, ZNF160, ENSG00000291131, ZNF845, ENSG00000268864, DPRX, ENSG00000269842, MYADM, MYADM-AS2, CACNG6, ENSG00000299998, LIM2, ZNF813, ENSG00000310422
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome Accessiongi|333031|lcl|HPV16REF.1|
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman Papillomavirus 16 (HPV16), complete genome
Virus Genome Length7904 bp
Virus Breakpoint15951
Virus Breakpoint27906
Virus Gene NameE2,E4
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-