Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20068947

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20068947
Fusion NameHPV-ENSG00000302669 integration
ValidatedNo
Curated WayCurated
MethodNanopore Long-Read Sequencing
Wet AssayYes
Sample ID-
Sample NameHPV35 tissue
Sample TypeTumor
Age-
GenderFemale
Disease Information
Disease NameCervical Cancer
Disease AbbreviationCC
CancerYes
Literature
PubMed ID38932482
JournalJournal of Medical Virology
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh38/hg38
Human Genome RefSeq AccessionGCF_000001405.40
Human Chromosomechr3
Cytogenetic Bandq26.33
Human Strand+
Human Integration Location Typeintronic
Hg19 Start-
Hg19 End-
Hg38 Start182719593
Hg38 End182722309
Junction Sequence-
Target Gene
Target GeneENSG00000302669, ENSG00000302649
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV35
Virus Genome AccessionX74477.1
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 35H genomic DNA
Virus Genome Length7879 bp
Virus Breakpoint1963
Virus Breakpoint22324
Virus Gene NameL2
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-