Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20069052

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20069052
Fusion NameHPV-ENSG00000299916 integration
ValidatedNo
Curated WayCurated
MethodWhole genome sequencing
Wet AssayYes
Sample ID-
Sample NameOU10
Sample TypeTumor
Age40s
GenderMale
Disease Information
Disease NameHead and Neck squamous cell carcinoma
Disease AbbreviationHNSCC
CancerYes
Literature
PubMed ID39865078
JournalNature Communications
Published Year2025
Human Genome
Human Genome Version DescriptionGRCh38/hg38
Human Genome RefSeq AccessionGCF_000001405.40
Human Chromosomechr5
Cytogenetic Bandq33.1
Human Strand-
Human Integration Location Typeintronic
Hg19 Start-
Hg19 End-
Hg38 Start151647776
Hg38 End151647776
Junction Sequence-
Target Gene
Target GeneENSG00000299916, ENSG00000288081
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype Name-
Virus Genome AccessionGCA_001274345.1
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus genome ViralProj293723
Virus Genome Length-
Virus Breakpoint1762
Virus Breakpoint2-
Virus Gene NameE1
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-