| Basic Information ▶ | |
| VISDB ID | TVIS20069139 |
|---|---|
| Fusion Name | HPV-LIPE-AS1 integration |
| Validated | No |
| Curated Way | Curated |
| Method | Whole genome sequencing |
| Wet Assay | Yes |
| Sample ID | - |
| Sample Name | PCAWG04 |
| Sample Type | Tumor |
| Age | 53 |
| Gender | Male |
| Disease Information ▶ | |
| Disease Name | Head and Neck squamous cell carcinoma |
| Disease Abbreviation | HNSCC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 39865078 |
| Journal | Nature Communications |
| Published Year | 2025 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh38/hg38 |
| Human Genome RefSeq Accession | GCF_000001405.40 |
| Human Chromosome | chr19 |
| Cytogenetic Band | q13.2 |
| Human Strand | + |
| Human Integration Location Type | intronic |
| Hg19 Start | - |
| Hg19 End | - |
| Hg38 Start | 42596267 |
| Hg38 End | 42596267 |
| Junction Sequence | - |
| Target Gene ▶ | |
| Target Gene | LIPE-AS1 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Human Papillomavirus |
| Virus Subtype Name | - |
| Virus Genome Accession | GCA_001274345.1 |
| TaxonomyID | 10566 |
| Virus Abbreviation | HPV |
| Virus Genome | Human papillomavirus genome ViralProj293723 |
| Virus Genome Length | - |
| Virus Breakpoint1 | 7771 |
| Virus Breakpoint2 | - |
| Virus Gene Name | E7 |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D