| Basic Information ▶ | |
| VISDB ID | TVIS30000175 |
|---|---|
| Fusion Name | HIV-chr2 integration |
| Validated | Yes |
| Curated Way | VISDB1.0 |
| Method | droplet digital PCR (ddPCR) |
| Wet Assay | Yes |
| Sample ID | Patient3 |
| Sample Name | Patient3 |
| Sample Type | PBMC |
| Age | 59 |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | HIV-infected disease |
| Disease Abbreviation | HID |
| Cancer | No |
| Literature ▶ | |
| PubMed ID | 30688658 |
| Journal | Journal of Clinical Investigation |
| Published Year | 2019 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr2 |
| Cytogenetic Band | p21 |
| Human Strand | + |
| Human Integration Location Type | Inergenic |
| Hg19 Start | 43368438 |
| Hg19 End | 43368438 |
| Hg38 Start | 43141299 |
| Hg38 End | 43141299 |
| Junction Sequence | - |
| Target Gene ▶ | |
| Target Gene | ENSG00000286796, LINC02580 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Human Immunodeficiency Virus |
| Virus Subtype Name | - |
| Virus Genome Accession | K03455.1 |
| TaxonomyID | 11676 |
| Virus Abbreviation | HIV |
| Virus Genome | Human immunodeficiency virus type 1 (HXB2), complete genome; HIV1/HTLV-III/LAV reference genome |
| Virus Genome Length | 9719 |
| Virus Breakpoint1 | - |
| Virus Breakpoint2 | - |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D