Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS30001185

Basic Information ▶
VISDB ID	TVIS30001185
Fusion Name	HIV-chrX integration
Validated	Yes
Curated Way	VISDB1.0
Method	QiaQuick PCR and Sequencing
Wet Assay	No
Sample ID	L1
Sample Name	L1
Sample Type	PBMC
Age	-
Gender	-
Disease Information ▶
Disease Name	HIV-infected disease
Disease Abbreviation	HID
Cancer	No
Literature ▶
PubMed ID	25011556
Journal	Science
Published Year	2014
Human Genome ▶
Human Genome Version Description	GRCh37/hg19
Human Genome RefSeq Accession	GCF_000001405.13
Human Chromosome	chrX
Cytogenetic Band	q13.3
Human Strand	+
Human Integration Location Type	Intergenic
Hg19 Start	75685067
Hg19 End	75685177
Hg38 Start	76464665
Hg38 End	76464665
Junction Sequence	GTGGCCTTGAATGGTAATTAGTATTTCTATGATATCAGTTGTAATACCTTCTATTTTATTTCGAATTGAGCTTATTTAGATATTGTCTCTTATTTTCTTGGTTAATCTTA
Target Gene ▶
Target Gene	-
Nearby Gene	-
Distance	-
Virus Information ▶
Virus Name	Human Immunodeficiency Virus
Virus Subtype Name	-
Virus Genome Accession	Not given
TaxonomyID	11676
Virus Abbreviation	HIV
Virus Genome	-
Virus Genome Length	9719
Virus Breakpoint1	-
Virus Breakpoint2	-
Virus Gene Name	-
Virus Region Type	-
Integrated Virus Sequence	-
ViMIC ID	-
Predicted VIS Effect ▶
Region	intergenic
Impact	NA

AlphaGenome Analysis
Window	chrX:76399129-76530201
RNA-seq Change (±2kb)	Mean: 2.014987330767326e-05 \| Peak: 0.0108642578125
ATAC Change (±2kb)	Mean: 5.247477747616358e-05 \| Peak: 1.0155953168869019
Interpretation	RNA-seq: no signal in region (REF≈0, ALT≈0) \| Splice sites: no signal in region (REF≈0, ALT≈0) \| ATAC: no signal in region (REF≈0, ALT≈0)
Visualization