Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS30001419

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS30001419
Fusion NameHIV-TBC1D13 integration
ValidatedYes
Curated WayVISDB1.0
MethodQiaQuick PCR and Sequencing
Wet AssayNo
Sample IDR1
Sample NameR1
Sample TypePBMC
Age-
Gender-
Disease Information
Disease NameHIV-infected disease
Disease AbbreviationHID
CancerNo
Literature
PubMed ID25011556
JournalScience
Published Year2014
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr9
Cytogenetic Bandq34.11
Human Strand-
Human Integration Location TypeIntronic
Hg19 Start131563010
Hg19 End131563432
Hg38 Start128800731
Hg38 End128800731
Junction SequenceGTCACCCAGGCTGGAGTGCAATGGAGTGATCTTGGCTCACTGCAACTCTGTCTCCTAGGTTCAAACTATTCTCCCACCTCAGCCTCCCAAGTAGCTGAGATTATAGGTGCTCACAACCACGCCTGGCATTTTTTTGTTGTTGTTTTGTATTTTTAGTAGAGAGGGGGTTCCACCATGTTGGTCAGGCTGGTCTCAAACTCCTGACTTCAGGTGATCCACCTGCCTTGGCCTCCCAAAGTGTTGGGATTACAGGTG
Target Gene
Target GeneTBC1D13
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Immunodeficiency Virus
Virus Subtype Name-
Virus Genome AccessionNot given
TaxonomyID11676
Virus AbbreviationHIV
Virus Genome-
Virus Genome Length9719
Virus Breakpoint1-
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-