Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS30003790

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS30003790
Fusion NameHIV-CTC-338M12.4 integration
ValidatedNo
Curated WayVISDB1.0
MethodQiaQuick PCR and Sequencing
Wet AssayNo
Sample IDActive CD4+
Sample NameActive CD4+
Sample TypeCell line
Age-
Gender-
Disease Information
Disease NameHIV-infected disease
Disease AbbreviationHID
CancerNo
Literature
PubMed ID23953889
JournalRetrovirology
Published Year2013
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr5
Cytogenetic Bandq35.3
Human Strand-
Human Integration Location TypencRNA_exonic
Hg19 Start180684226
Hg19 End180684226
Hg38 Start181257225
Hg38 End181257225
Junction Sequence-
Target Gene
Target GeneTRIM52, TRIM52-AS1
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Immunodeficiency Virus
Virus Subtype Name-
Virus Genome AccessionNot given
TaxonomyID11676
Virus AbbreviationHIV
Virus Genome-
Virus Genome Length9719
Virus Breakpoint1-
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-